What size MAF housing are you using? The original MAF editor just multiplies the constants in your bin maf table by whatever multiplier constant you enter. I.e. the usual constants supplied (1.34, 1.94, 2.57) assume you're starting with a stock bin.
If you've already modified the MAF table in your bin and you need to update it again (and you're going with one of the std sizes) I recommend you use the "Alternative Mafconverter" available here:
http://m44.wikia.com/wiki/Modified_Vehicles
direct link:
http://www.meditekst.nl/M44/M44_MAF_Converter.zip
I recently ran into this when I switched from S90 to 540i maf housing. To answer your question; no, if the maf conversion is done correctly, you should not have to mod other params for the maf update.
And remember, use your stock maf sensor; you're only up-sizing the housing.
BTW: I'm assuming we can all thank Piet for both of these apps?